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Blog, Clinical NLP, Paper

Large language models for biomedicine: foundations, opportunities, challenges, and best practices

April 25, 20240Comments
Satya Sahoo, Joseph Plasek, Hua Xu, Ozlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane Meystre , Yanshan Wang J Am Med Inform Assoc, published…
Blog, Clinical NLP

Keynote presentation at the Applied Machine Learning Days (AMLD’24) conference “Clinical AI: from research and development to the bedside” track

March 25, 20240Comments
Prof. Meystre presented a keynote on "Opening the Treasure Trove Chest: AI to Enable Clinical Data Reuse for Research and Care Support" at the Clinical…
Blog, Clinical NLP, Paper, Reuse for CDS

Natural Language Processing Enabling COVID-19 Predictive Analytics to Support Data-Driven Patient Advising and Pooled Testing

October 8, 20210Comments
Stéphane M Meystre, Paul M Heider, Youngjun Kim, Matthew Davis, Jihad Obeid, James Madory, Alexander V Alekseyenko J Am Med Inform Assoc. Volume 29, Issue 1, January 2022, Pages 12–21, https://doi.org/10.1093/jamia/ocab186. Available…
Blog, Clinical NLP, Paper

A Hybrid Model for Family History Information Identification and Relation Extraction: Development and Evaluation of an End-to-End Information Extraction System

April 30, 20210Comments
Youngjun Kim, Paul M Heider, Isabel Rh Lally, and Stéphane M Meystre JMIR Med Inform. 2021 Apr 22;9(4):e22797. Available at: https://pubmed.ncbi.nlm.nih.gov/33885370/ and at: https://medinform.jmir.org/2021/4/e22797/
Blog, Clinical NLP, Grant

New PCORI funding for COVID-19 related efforts

October 1, 20200Comments
PCORI awarded our MUSC team partnering with Vanderbilt University funding to develop, test and share a new software application for COVID-19 related information extraction based…
Blog, Clinical NLP, Grant, Project

New research funding from PCORI

September 3, 20190Comments
This new research contract will support collaborative efforts between MUSC and Vanderbilt University (Glenn Gobbel and his team). Our general objective is to develop and…
Blog, Clinical NLP, Portfolio

ETUDE for Easy and Efficient NLP Application Evaluation

November 14, 20180Comments
NLP development and evaluation requires tools to compare annotations, analyze differences, and compute accuracy metrics. None of the few existing tools allows consuming the output of…
Blog, Clinical NLP, Reuse for research

n2c2 Shared Task and Workshop 2018

November 14, 20180Comments
The 2018 n2c2 shared tasks focused on Cohort Selection for Clinical Trials (track 1) and on Adverse Drug Events and Medication Extraction (track 2). We participated in both…
Blog, Clinical NLP, Paper

Exploiting Unlabeled Texts with Clustering-based Instance Selection for Medical Relation Classification

November 15, 20170Comments
Kim, Y., Riloff, E., & Meystre, S. M. (2017). Exploiting Unlabeled Texts with Clustering-based Instance Selection for Medical Relation Classification (pp. 1060–1069). Presented at the…
Blog, Clinical NLP, Reuse for research

Unstructured Clinical Data Reuse for Precision Medicine

October 5, 20170Comments
The "Unstructured Clinical Data Reuse for Precision Medicine" Workshop organized at the Medinfo 2017 conference in Hangzhou, China, was a great success. Taking place on…

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